Research Groups

Section of Genetics - Biostatistics Group

Previous Publications - All Publications 2016-2012

1. Moskal A., Freisling H., Byrnes G., Assi N., Fahey M. T., Jenab M., Ferrari P., Tjonneland A., Petersen K. E., Dahm C. C., Hansen C. P., Affret A., Boutron-Ruault M. C., Cadeau C., Kuhn T., Katzke V., Iqbal K., Boeing H., Trichopoulou A., Bamia C., Naska A., Masala G., de Magistris M. S., Sieri S., Tumino R., Sacerdote C., Peeters P. H., Bueno-de-Mesquita B. H., Engeset D., Licaj I., Skeie G., Ardanaz E., Buckland G., Castano J. M., Quiros J. R., Amiano P., Molina-Portillo E., Winkvist A., Myte R., Ericson U., Sonestedt E., Perez-Cornago A., Wareham N., Khaw K. T., Huybrechts I., Tsilidis K. K., Ward H., Gunter M. J., Slimani N. (2016) Main nutrient patterns and colorectal cancer risk in the European Prospective Investigation into Cancer and Nutrition study Br J Cancer; 115(11):1430-1440. PMID: 27764841

2. Bouaoun L., Sonkin D., Ardin M., Hollstein M., Byrnes G., Zavadil J., Olivier M. (2016) TP53 Variations in Human Cancers: New Lessons from the IARC TP53 Database and Genomics Data Hum Mutat; 37(9):865-76. PMID: 27328919

3. Freisling H., Pisa P. T., Ferrari P., Byrnes G., Moskal A., Dahm C. C., Vergnaud A. C., Boutron-Ruault M. C., Fagherazzi G., Cadeau C., Kuhn T., Neamat-Allah J., Buijsse B., Boeing H., Halkjaer J., Tjonneland A., Hansen C. P., Quiros J. R., Travier N., Molina-Montes E., Amiano P., Huerta J. M., Barricarte A., Khaw K. T., Wareham N., Key T. J., Romaguera D., Lu Y., Lassale C. M., Naska A., Orfanos P., Trichopoulou A., Masala G., Pala V., Berrino F., Tumino R., Ricceri F., de Magistris M. S., Bueno-de-Mesquita H. B., Ocke M. C., Sonestedt E., Ericson U., Johansson M., Skeie G., Weiderpass E., Braaten T., Peeters P. H., Slimani N. (2016) Main nutrient patterns are associated with prospective weight change in adults from 10 European countries Eur J Nutr; 55(6):2093-104. PMID: 26303194

4. Lachat C., Hawwash D., Ocke M. C., Berg C., Forsum E., Hornell A., Larsson C. L., Sonestedt E., Wirfalt E., Akesson A., Kolsteren P., Byrnes G., De Keyzer W., Van Camp J., Cade J. E., Slimani N., Cevallos M., Egger M., Huybrechts I. (2016) Strengthening the Reporting of Observational Studies in Epidemiology - nutritional epidemiology (STROBE-nut): An extension of the STROBE statement Nutr Bull; 41(3):240-251. PMID: 27587981

5. Lachat C., Hawwash D., Ocke M. C., Berg C., Forsum E., Hornell A., Larsson C., Sonestedt E., Wirfalt E., Akesson A., Kolsteren P., Byrnes G., De Keyzer W., Van Camp J., Cade J. E., Slimani N., Cevallos M., Egger M., Huybrechts I. (2016) Strengthening the Reporting of Observational Studies in Epidemiology-Nutritional Epidemiology (STROBE-nut): An Extension of the STROBE Statement PLoS Med; 13(6):e1002036. PMID: 27270749

6. Zamora-Ros R., Rinaldi S., Tsilidis K. K., Weiderpass E., Boutron-Ruault M. C., Rostgaard-Hansen A. L., Tjonneland A., Clavel-Chapelon F., Mesrine S., Katzke V. A., Kuhn T., Forster J., Boeing H., Trichopoulou A., Lagiou P., Klinaki E., Masala G., Sieri S., Ricceri F., Tumino R., Mattiello A., Peeters P. H., Bueno-de-Mesquita H. B., Engeset D., Skeie G., Arguelles M., Agudo A., Sanchez M. J., Chirlaque M. D., Barricarte A., Chamosa S., Almquist M., Tosovic A., Hennings J., Sandstrom M., Schmidt J. A., Khaw K. T., Wareham N. J., Cross A. J., Slimani N., Byrnes G., Romieu I., Riboli E., Franceschi S. (2016) Energy and macronutrient intake and risk of differentiated thyroid carcinoma in the European Prospective Investigation into Cancer and Nutrition study Int J Cancer; 138(1):65-73. PMID: 26190646

7. Ardin M., Cahais V., Castells X., Bouaoun L., Byrnes G., Herceg Z., Zavadil J., Olivier M. (2016) MutSpec: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes BMC Bioinformatics; 170. PMID: 27091472

8. Assi N., Fages A., Vineis P., Chadeau-Hyam M., Stepien M., Duarte-Salles T., Byrnes G., Boumaza H., Knuppel S., Kuhn T., Palli D., Bamia C., Boshuizen H., Bonet C., Overvad K., Johansson M., Travis R., Gunter M. J., Lund E., Dossus L., Elena-Herrmann B., Riboli E., Jenab M., Viallon V., Ferrari P. (2015) A statistical framework to model the meeting-in-the-middle principle using metabolomic data: application to hepatocellular carcinoma in the EPIC study Mutagenesis; 30(6):743-53. PMID: 26130468

9. Ghantous A., Hernandez-Vargas H., Byrnes G., Dwyer T., Herceg Z. (2015) Characterising the epigenome as a key component of the fetal exposome in evaluating in utero exposures and childhood cancer risk Mutagenesis; 30(6):733-42. PMID: 25724893

10. Arnold M., Pandeya N., Byrnes G., Renehan A.G., Stevens G.A., Ezzati M., Ferlay J., Miranda J.J., Romieu I., Dikshit R., Forman D., Soerjomataram I. (2015) Global burden of cancer attributable to high body-mass index in 2012: a population-based study Lancet Oncol; 16(1):36-46. PMID: 25467404

11. Delahaye-Sourdeix M., Anantharaman D., Timofeeva M.N., Gaborieau V., Chabrier A., Vallee M.P., Lagiou P., Holcatova I., Richiardi L., Kjaerheim K., Agudo A., Castellsague X., Macfarlane T.V., Barzan L., Canova C., Thakker N.S., Conway D.I., Znaor A., Healy C.M., Ahrens W., Zaridze D., Szeszenia-Dabrowska N., Lissowska J., Fabianova E., Mates I.N., Bencko V., Foretova L., Janout V., Curado M.P., Koifman S., Menezes A., Wunsch-Filho V., Eluf-Neto J., Boffetta P., Fernandez Garrote L., Polesel J., Lener M., Jaworowska E., Lubinski J., Boccia S., Rajkumar T., Samant T.A., Mahimkar M.B., Matsuo K., Franceschi S., Byrnes G., Brennan P., McKay J.D. (2015) A Rare Truncating BRCA2 Variant and Genetic Susceptibility to Upper Aerodigestive Tract Cancer J Natl. Cancer Inst; 107(5):pii: djv037. PMID: 25838448

12. Delahaye-Sourdeix M., Oliver J., Timofeeva M.N., Gaborieau V., Johansson M., Chabrier A., Wozniak M.B., Brenner D.R., Vallee M.P., Anantharaman D., Lagiou P., Holcatova I., Richiardi L., Kjaerheim K., Agudo A., Castellsague X., Macfarlane T.V., Barzan L., Canova C., Thakker N.S., Conway D.I., Znaor A., Healy C.M., Ahrens W., Zaridze D., Szeszenia-Dabrowska N., Lissowska J., Fabianova E., Mates I.N., Bencko V., Foretova L., Janout V., Curado M.P., Koifman S., Menezes A., Wunsch-Filho V., Eluf-Neto J., Boffetta P., Garrote L.F., Serraino D., Lener M., Jaworowska E., Lubinski J., Boccia S., Rajkumar T., Samant T.A., Mahimkar M.B., Matsuo K., Franceschi S., Byrnes G., Brennan P., McKay J.D. (2015) The 12p13.33/RAD52 Locus and Genetic Susceptibility to Squamous Cell Cancers of Upper Aerodigestive Tract PLoS. One; 10(3):e0117639. PMID: 25793373

13. Pertesi M., Galia P., Nazaret N., Vallee M., Garderet L., Leleu X., Avet-Loiseau H., Foll M., Byrnes G., Lachuer J., McKay J.D., Dumontet C. (2015) Rare Circulating Cells in Familial Waldenstrom Macroglobulinemia Displaying the MYD88 L265P Mutation Are Enriched by Epstein-Barr Virus Immortalization PLoS. One; 10(9):e0136505.

14. Zamora-Ros R., Rinaldi S., Biessy C., Tjonneland A., Halkjaer J., Fournier A., Boutron-Ruault M.C., Mesrine S., Tikk K., Fortner R.T., Boeing H., Forster J., Trichopoulou A., Trichopoulos D., Papatesta E.M., Masala G., Tagliabue G., Panico S., Tumino R., Polidoro S., Peeters P.H., Bueno-de-Mesquita H.B., Weiderpass E., Lund E., Arguelles M., Agudo A., Molina-Montes E., Navarro C., Barricarte A., Larranaga N., Manjer J., Almquist M., Sandstrom M., Hennings J., Tsilidis K.K., Schmidt J.A., Khaw K.T., Wareham N.J., Romieu I., Byrnes G., Gunter M.J., Riboli E., Franceschi S. (2015) Reproductive and menstrual factors and risk of differentiated thyroid carcinoma: The EPIC study Int J Cancer; 136(5):1218-1227. PMID: 25041790

15. Damiola F., Byrnes G., Moissonnier M., Pertesi M., Deltour I., Fillon A., Le Calvez-Kelm F., Tenet V., McKay-Chopin S., McKay J.D., Malakhova I., Masyakin V., Cardis E., Lesueur F., Kesminiene A. (2014) Contribution of ATM and FOXE1 (TTF2) to risk of papillary thyroid carcinoma in Belarusian children exposed to radiation Int J Cancer; 134(7):1659-1668.

16. McCormack V., Peto J., Byrnes G., Straif K., Boffetta P. (2014) Br J Cancer; 2381.

17. Moskal A., Pisa P.T., Ferrari P., Byrnes G., Freisling H., Boutron-Ruault M.C., Cadeau C., Nailler L., Wendt A., Kuhn T., Boeing H., Buijsse B., Tjonneland A., Halkjaer J., Dahm C.C., Chiuve S.E., Quiros J.R., Buckland G., Molina-Montes E., Amiano P., Huerta Castano J.M., Gurrea A.B., Khaw K.T., Lentjes M.A., Key T.J., Romaguera D., Vergnaud A.C., Trichopoulou A., Bamia C., Orfanos P., Palli D., Pala V., Tumino R., Sacerdote C., de Magistris M.S., Bueno-de-Mesquita H.B., Ocke M.C., Beulens J.W., Ericson U., Drake I., Nilsson L.M., Winkvist A., Weiderpass E., Hjartaker A., Riboli E., Slimani N. (2014) Nutrient Patterns and Their Food Sources in an International Study Setting: Report from the EPIC Study PLoS ONE; 9(6):e98647.

18. Olivier M., Weninger A., Ardin M., Huskova H., Castells X., Vallee M.P., McKay J., Nedelko T., Muehlbauer K.R., Marusawa H., Alexander J., Hazelwood L., Byrnes G., Hollstein M., Zavadil J. (2014) Modelling mutational landscapes of human cancers in vitro Sci Rep; 4482.

19. Rinaldi S., Plummer M., Biessy C., Tsilidis K.K., Ostergaard J.N., Overvad K., Tjonneland A., Halkjaer J., Boutron-Ruault M.C., Clavel-Chapelon F., Dossus L., Kaaks R., Lukanova A., Boeing H., Trichopoulou A., Lagiou P., Trichopoulos D., Palli D., Agnoli C., Tumino R., Vineis P., Panico S., Bueno-de-Mesquita H.B., Peeters P.H., Weiderpass E., Lund E., Quiros J.R., Agudo A., Molina E., Larranaga N., Navarro C., Ardanaz E., Manjer J., Almquist M., Sandstrom M., Hennings J., Khaw K.T., Schmidt J., Travis R.C., Byrnes G., Scalbert A., Romieu I., Gunter M., Riboli E., Franceschi S. (2014) Thyroid-stimulating hormone, thyroglobulin, and thyroid hormones and risk of differentiated thyroid carcinoma: the EPIC study J Natl Cancer Inst; 106(6):dju097.

20. Scelo G., Riazalhosseini Y., Greger L., Letourneau L., Gonzalez-Porta M., Wozniak M.B., Bourgey M., Harnden P., Egevad L., Jackson S.M., Karimzadeh M., Arseneault M., Lepage P., How-Kit A., Daunay A., Renault V., Blanche H., Tubacher E., Sehmoun J., Viksna J., Celms E., Opmanis M., Zarins A., Vasudev N.S., Seywright M., Abedi-Ardekani B., Carreira C., Selby P.J., Cartledge J.J., Byrnes G., Zavadil J., Su J., Holcatova I., Brisuda A., Zaridze D., Moukeria A., Foretova L., Navratilova M., Mates D., Jinga V., Artemov A., Nedoluzhko A., Mazur A., Rastorguev S., Boulygina E., Heath S., Gut M., Bihoreau M.T., Lechner D., Foglio M., Gut I.G., Skryabin K., Prokhortchouk E., Cambon-Thomsen A., Rung J., Bourque G., Brennan P., Tost J., Banks R.E., Brazma A., Lathrop G.M. (2014) Variation in genomic landscape of clear cell renal cell carcinoma across Europe Nat Commun; 5135.

21. Caboux E., Paciencia M., Durand G., Robinot N., Wozniak M.B., Galateau-Salle F., Byrnes G., Hainaut P., Le Calvez-Kelm F. (2013) Impact of delay to cryopreservation on RNA integrity and genome-wide expression profiles in resected tumor samples PLoS. One; 8(11):e79826.

22. Kreimer A.R., Johansson M., Waterboer T., Kaaks R., Chang-Claude J., Drogen D., Tjonneland A., Overvad K., Quiros J.R., Gonzalez C.A., Sanchez M.J., Larranaga N., Navarro C., Barricarte A., Travis R.C., Khaw K.T., Wareham N., Trichopoulou A., Lagiou P., Trichopoulos D., Peeters P.H., Panico S., Masala G., Grioni S., Tumino R., Vineis P., Bueno-de-Mesquita H.B., Laurell G., Hallmans G., Manjer J., Ekstrom J., Skeie G., Lund E., Weiderpass E., Ferrari P., Byrnes G., Romieu I., Riboli E., Hildesheim A., Boeing H., Pawlita M., Brennan P. (2013) Evaluation of human papillomavirus antibodies and risk of subsequent head and neck cancer J Clin Oncol; 31(21):2708-2715.

23. Manser R., Lethaby A., Irving L.B., Stone C., Byrnes G., Abramson M.J., Campbell D. (2013) Screening for lung cancer Cochrane. Database. Syst. Rev; CD001991.

24. Mathews J.D., Forsythe A.V., Brady Z., Butler M.W., Goergen S.K., Byrnes G.B., Giles G.G., Wallace A.B., Anderson P.R., Guiver T.A., McGale P., Cain T.M., Dowty J.G., Bickerstaffe A.C., Darby S.C. (2013) Cancer risk in 680,000 people exposed to computed tomography scans in childhood or adolescence: data linkage study of 11 million Australians BMJ; f2360.

25. Wozniak M.B., Le Calvez-Kelm F., Abedi-Ardekani B., Byrnes G., Durand G., Carreira C., Michelon J., Janout V., Holcatova I., Foretova L., Brisuda A., Lesueur F., McKay J., Brennan P., Scelo G. (2013) Integrative genome-wide gene expression profiling of clear cell renal cell carcinoma in Czech Republic and in the United States PLoS. One; 8(3):e57886.

26. Burgess J.A., Abramson M.J., Gurrin L.C., Byrnes G.B., Matheson M.C., Wharton C.L., Giles G.G., Johns D.P., Hopper J.L., Walters E.H., Dharmage S.C. (2012) Childhood infections and the risk of asthma: a longitudinal study over 37 years Chest; 142(3):647-654.

27. Freisling H., van Bakel M.M., Biessy C., May A.M., Byrnes G., Norat T., Rinaldi S., Santucci de Magistris M., Grioni S., Bas Bueno-de-Mesquita H., Ocke M.C., Kaaks R., Teucher B., Vergnaud A.C., Romaguera D., Sacerdote C., Palli D., Crowe F.L., Tumino R., Clavel-Chapelon F., Boutron-Ruault M.C., Khaw K.T., Wareham N.J., Trichopoulou A., Naska A., Orfanos P., Boeing H., Illner A.K., Riboli E., Peeters P.H., Slimani N. (2012) Dietary reporting errors on 24 h recalls and dietary questionnaires are associated with BMI across six European countries as evaluated with recovery biomarkers for protein and potassium intake Br J Nutr; 107(6):910-920.

28. Johansson M., Roberts A., Chen D., Li Y., Delahaye-Sourdeix M., Aswani N., Greenwood M.A., Benhamou S., Lagiou P., Holcatova I., Richiardi L., Kjaerheim K., Agudo A., Castellsague X., Macfarlane T.V., Barzan L., Canova C., Thakker N.S., Conway D.I., Znaor A., Healy C.M., Ahrens W., Zaridze D., Szeszenia-Dabrowska N., Lissowska J., Fabianova E., Mates I.N., Bencko V., Foretova L., Janout V., Curado M.P., Koifman S., Menezes A., Wunsch-Filho V., Eluf-Neto J., Boffetta P., Franceschi S., Herrero R., Fernandez Garrote L., Talamini R., Boccia S., Galan P., Vatten L., Thomson P., Zelenika D., Lathrop M., Byrnes G., Cunningham H., Brennan P., Wakefield J., McKay J.D. (2012) Using Prior Information from the Medical Literature in GWAS of Oral Cancer Identifies Novel Susceptibility Variant on Chromosome 4 - the AdAPT Method PLoS ONE; 7(5):e36888.

29. Kesminiene A., Evrard A.S., Ivanov V.K., Malakhova I.V., Kurtinaitise J., Stengrevics A., Tekkel M., Chekin S., Drozdovitch V., Gavrilin Y., Golovanov I., Kryuchkov V.P., Maceika E., Mirkhaidarov A.K., Polyakov S., Tenet V., Tukov A.R., Byrnes G., Cardis E. (2012) Risk of Thyroid Cancer among Chernobyl Liquidators Radiat Res; 178(5):425-436.

30. Khademi H., Malekzadeh R., Pourshams A., Jafari E., Salahi R., Semnani S., Abaie B., Islami F., Nasseri-Moghaddam S., Etemadi A., Byrnes G., Abnet C.C., Dawsey S.M., Day N.E., Pharoah P.D., Boffetta P., Brennan P., Kamangar F. (2012) Opium use and mortality in Golestan Cohort Study: prospective cohort study of 50 000 adults in Iran BMJ; e2502.

31. Khademi H., Radmard A.R., Malekzadeh F., Kamangar F., Nasseri-Moghaddam S., Johansson M., Byrnes G., Brennan P., Malekzadeh R. (2012) Diagnostic Accuracy of Age and Alarm Symptoms for Upper GI Malignancy in Patients with Dyspepsia in a GI Clinic: A 7-Year Cross-Sectional Study PLoS ONE; 7(6):e39173.

32. Le Calvez-Kelm F., Oliver J., Damiola F., Forey N., Robinot N., Durand G., Voegele C., Vallee M.P., Byrnes G., Registry B.C., Hopper J.L., Southey M.C., Andrulis I.L., John E.M., Tavtigian S.V., Lesueur F. (2012) RAD51 and breast cancer susceptibility: no evidence for rare variant association in the Breast Cancer Family Registry study PLoS ONE; 7(12):e52374.

33. McCormack V., Peto J., Byrnes G., Straif K., Boffetta P. (2012) Estimating the asbestos-related lung cancer burden from mesothelioma mortality Br J Cancer; 106(3):575-584.

34. Rinaldi S., Lise M., Clavel-Chapelon F., Boutron-Ruault M.C., Guillas G., Overvad K., Tjonneland A., Halkjaer J., Lukanova A., Kaaks R., Bergmann M.M., Boeing H., Trichopoulou A., Zylis D., Valanou E., Palli D., Agnoli C., Tumino R., Polidoro S., Mattiello A., Bas Bueno-de-Mesquita H., Peeters P.H., Weiderpass E., Lund E., Skeie G., Rodriguez L., Travier N., Sanchez M.J., Amiano P., Huerta J.M., Ardanaz E., Rasmuson T., Hallmans G., Almquist M., Manjer J., Tsilidis K.K., Allen N.E., Khaw K.T., Wareham N., Byrnes G., Romieu I., Riboli E., Franceschi S. (2012) Body size and risk of differentiated thyroid carcinomas: Findings from the EPIC study Int J Cancer; 131(6):E1004-E1014.

35. Wermuth N. (2012) Traceable Regressions International Statistical Review; 80(3):415-438.