Research Groups

Section of Genetics - Biostatistics Group

Previous Publications - All Publications 2017-2013

1. Moskal A., Freisling H., Byrnes G., Assi N., Fahey M. T., Jenab M., Ferrari P., Tjonneland A., Petersen K. E., Dahm C. C., Hansen C. P., Affret A., Boutron-Ruault M. C., Cadeau C., Kuhn T., Katzke V., Iqbal K., Boeing H., Trichopoulou A., Bamia C., Naska A., Masala G., de Magistris M. S., Sieri S., Tumino R., Sacerdote C., Peeters P. H., Bueno-de-Mesquita B. H., Engeset D., Licaj I., Skeie G., Ardanaz E., Buckland G., Castano J. M., Quiros J. R., Amiano P., Molina-Portillo E., Winkvist A., Myte R., Ericson U., Sonestedt E., Perez-Cornago A., Wareham N., Khaw K. T., Huybrechts I., Tsilidis K. K., Ward H., Gunter M. J., Slimani N. (2016) Main nutrient patterns and colorectal cancer risk in the European Prospective Investigation into Cancer and Nutrition study Br J Cancer; 115(11):1430-1440. PMID: 27764841

2. Lachat C., Hawwash D., Ocke M. C., Berg C., Forsum E., Hornell A., Larsson C. L., Sonestedt E., Wirfalt E., Akesson A., Kolsteren P., Byrnes G., De Keyzer W., Van Camp J., Cade J. E., Slimani N., Cevallos M., Egger M., Huybrechts I. (2016) Strengthening the Reporting of Observational Studies in Epidemiology - nutritional epidemiology (STROBE-nut): An extension of the STROBE statement Nutr Bull; 41(3):240-251. PMID: 27587981

3. Freisling H., Pisa P. T., Ferrari P., Byrnes G., Moskal A., Dahm C. C., Vergnaud A. C., Boutron-Ruault M. C., Fagherazzi G., Cadeau C., Kuhn T., Neamat-Allah J., Buijsse B., Boeing H., Halkjaer J., Tjonneland A., Hansen C. P., Quiros J. R., Travier N., Molina-Montes E., Amiano P., Huerta J. M., Barricarte A., Khaw K. T., Wareham N., Key T. J., Romaguera D., Lu Y., Lassale C. M., Naska A., Orfanos P., Trichopoulou A., Masala G., Pala V., Berrino F., Tumino R., Ricceri F., de Magistris M. S., Bueno-de-Mesquita H. B., Ocke M. C., Sonestedt E., Ericson U., Johansson M., Skeie G., Weiderpass E., Braaten T., Peeters P. H., Slimani N. (2016) Main nutrient patterns are associated with prospective weight change in adults from 10 European countries Eur J Nutr; 55(6):2093-104. PMID: 26303194

4. Bouaoun L., Sonkin D., Ardin M., Hollstein M., Byrnes G., Zavadil J., Olivier M. (2016) TP53 Variations in Human Cancers: New Lessons from the IARC TP53 Database and Genomics Data Hum Mutat; 37(9):865-76. PMID: 27328919

5. Lachat C., Hawwash D., Ocke M. C., Berg C., Forsum E., Hornell A., Larsson C., Sonestedt E., Wirfalt E., Akesson A., Kolsteren P., Byrnes G., De Keyzer W., Van Camp J., Cade J. E., Slimani N., Cevallos M., Egger M., Huybrechts I. (2016) Strengthening the Reporting of Observational Studies in Epidemiology-Nutritional Epidemiology (STROBE-nut): An Extension of the STROBE Statement PLoS Med; 13(6):e1002036. PMID: 27270749

6. Zamora-Ros R., Rinaldi S., Tsilidis K. K., Weiderpass E., Boutron-Ruault M. C., Rostgaard-Hansen A. L., Tjonneland A., Clavel-Chapelon F., Mesrine S., Katzke V. A., Kuhn T., Forster J., Boeing H., Trichopoulou A., Lagiou P., Klinaki E., Masala G., Sieri S., Ricceri F., Tumino R., Mattiello A., Peeters P. H., Bueno-de-Mesquita H. B., Engeset D., Skeie G., Arguelles M., Agudo A., Sanchez M. J., Chirlaque M. D., Barricarte A., Chamosa S., Almquist M., Tosovic A., Hennings J., Sandstrom M., Schmidt J. A., Khaw K. T., Wareham N. J., Cross A. J., Slimani N., Byrnes G., Romieu I., Riboli E., Franceschi S. (2016) Energy and macronutrient intake and risk of differentiated thyroid carcinoma in the European Prospective Investigation into Cancer and Nutrition study Int J Cancer; 138(1):65-73. PMID: 26190646

7. Ardin M., Cahais V., Castells X., Bouaoun L., Byrnes G., Herceg Z., Zavadil J., Olivier M. (2016) MutSpec: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes BMC Bioinformatics; 170. PMID: 27091472

8. Ghantous A., Hernandez-Vargas H., Byrnes G., Dwyer T., Herceg Z. (2015) Characterising the epigenome as a key component of the fetal exposome in evaluating in utero exposures and childhood cancer risk Mutagenesis; 30(6):733-42. PMID: 25724893

9. Assi N., Fages A., Vineis P., Chadeau-Hyam M., Stepien M., Duarte-Salles T., Byrnes G., Boumaza H., Knuppel S., Kuhn T., Palli D., Bamia C., Boshuizen H., Bonet C., Overvad K., Johansson M., Travis R., Gunter M. J., Lund E., Dossus L., Elena-Herrmann B., Riboli E., Jenab M., Viallon V., Ferrari P. (2015) A statistical framework to model the meeting-in-the-middle principle using metabolomic data: application to hepatocellular carcinoma in the EPIC study Mutagenesis; 30(6):743-53. PMID: 26130468

10. Zamora-Ros R., Rinaldi S., Biessy C., Tjonneland A., Halkjaer J., Fournier A., Boutron-Ruault M.C., Mesrine S., Tikk K., Fortner R.T., Boeing H., Forster J., Trichopoulou A., Trichopoulos D., Papatesta E.M., Masala G., Tagliabue G., Panico S., Tumino R., Polidoro S., Peeters P.H., Bueno-de-Mesquita H.B., Weiderpass E., Lund E., Arguelles M., Agudo A., Molina-Montes E., Navarro C., Barricarte A., Larranaga N., Manjer J., Almquist M., Sandstrom M., Hennings J., Tsilidis K.K., Schmidt J.A., Khaw K.T., Wareham N.J., Romieu I., Byrnes G., Gunter M.J., Riboli E., Franceschi S. (2015) Reproductive and menstrual factors and risk of differentiated thyroid carcinoma: The EPIC study Int J Cancer; 136(5):1218-1227. PMID: 25041790

11. Pertesi M., Galia P., Nazaret N., Vallee M., Garderet L., Leleu X., Avet-Loiseau H., Foll M., Byrnes G., Lachuer J., McKay J.D., Dumontet C. (2015) Rare Circulating Cells in Familial Waldenstrom Macroglobulinemia Displaying the MYD88 L265P Mutation Are Enriched by Epstein-Barr Virus Immortalization PLoS. One; 10(9):e0136505. PMID: 26352266

12. Delahaye-Sourdeix M., Oliver J., Timofeeva M.N., Gaborieau V., Johansson M., Chabrier A., Wozniak M.B., Brenner D.R., Vallee M.P., Anantharaman D., Lagiou P., Holcatova I., Richiardi L., Kjaerheim K., Agudo A., Castellsague X., Macfarlane T.V., Barzan L., Canova C., Thakker N.S., Conway D.I., Znaor A., Healy C.M., Ahrens W., Zaridze D., Szeszenia-Dabrowska N., Lissowska J., Fabianova E., Mates I.N., Bencko V., Foretova L., Janout V., Curado M.P., Koifman S., Menezes A., Wunsch-Filho V., Eluf-Neto J., Boffetta P., Garrote L.F., Serraino D., Lener M., Jaworowska E., Lubinski J., Boccia S., Rajkumar T., Samant T.A., Mahimkar M.B., Matsuo K., Franceschi S., Byrnes G., Brennan P., McKay J.D. (2015) The 12p13.33/RAD52 Locus and Genetic Susceptibility to Squamous Cell Cancers of Upper Aerodigestive Tract PLoS. One; 10(3):e0117639. PMID: 25793373

13. Delahaye-Sourdeix M., Anantharaman D., Timofeeva M.N., Gaborieau V., Chabrier A., Vallee M.P., Lagiou P., Holcatova I., Richiardi L., Kjaerheim K., Agudo A., Castellsague X., Macfarlane T.V., Barzan L., Canova C., Thakker N.S., Conway D.I., Znaor A., Healy C.M., Ahrens W., Zaridze D., Szeszenia-Dabrowska N., Lissowska J., Fabianova E., Mates I.N., Bencko V., Foretova L., Janout V., Curado M.P., Koifman S., Menezes A., Wunsch-Filho V., Eluf-Neto J., Boffetta P., Fernandez Garrote L., Polesel J., Lener M., Jaworowska E., Lubinski J., Boccia S., Rajkumar T., Samant T.A., Mahimkar M.B., Matsuo K., Franceschi S., Byrnes G., Brennan P., McKay J.D. (2015) A Rare Truncating BRCA2 Variant and Genetic Susceptibility to Upper Aerodigestive Tract Cancer J Natl. Cancer Inst; 107(5):pii: djv037. PMID: 25838448

14. Arnold M., Pandeya N., Byrnes G., Renehan A.G., Stevens G.A., Ezzati M., Ferlay J., Miranda J.J., Romieu I., Dikshit R., Forman D., Soerjomataram I. (2015) Global burden of cancer attributable to high body-mass index in 2012: a population-based study Lancet Oncol; 16(1):36-46. PMID: 25467404

15. Scelo G., Riazalhosseini Y., Greger L., Letourneau L., Gonzalez-Porta M., Wozniak M.B., Bourgey M., Harnden P., Egevad L., Jackson S.M., Karimzadeh M., Arseneault M., Lepage P., How-Kit A., Daunay A., Renault V., Blanche H., Tubacher E., Sehmoun J., Viksna J., Celms E., Opmanis M., Zarins A., Vasudev N.S., Seywright M., Abedi-Ardekani B., Carreira C., Selby P.J., Cartledge J.J., Byrnes G., Zavadil J., Su J., Holcatova I., Brisuda A., Zaridze D., Moukeria A., Foretova L., Navratilova M., Mates D., Jinga V., Artemov A., Nedoluzhko A., Mazur A., Rastorguev S., Boulygina E., Heath S., Gut M., Bihoreau M.T., Lechner D., Foglio M., Gut I.G., Skryabin K., Prokhortchouk E., Cambon-Thomsen A., Rung J., Bourque G., Brennan P., Tost J., Banks R.E., Brazma A., Lathrop G.M. (2014) Variation in genomic landscape of clear cell renal cell carcinoma across Europe Nat Commun; 5135. PMID: 25351205

16. Rinaldi S., Plummer M., Biessy C., Tsilidis K.K., Ostergaard J.N., Overvad K., Tjonneland A., Halkjaer J., Boutron-Ruault M.C., Clavel-Chapelon F., Dossus L., Kaaks R., Lukanova A., Boeing H., Trichopoulou A., Lagiou P., Trichopoulos D., Palli D., Agnoli C., Tumino R., Vineis P., Panico S., Bueno-de-Mesquita H.B., Peeters P.H., Weiderpass E., Lund E., Quiros J.R., Agudo A., Molina E., Larranaga N., Navarro C., Ardanaz E., Manjer J., Almquist M., Sandstrom M., Hennings J., Khaw K.T., Schmidt J., Travis R.C., Byrnes G., Scalbert A., Romieu I., Gunter M., Riboli E., Franceschi S. (2014) Thyroid-stimulating hormone, thyroglobulin, and thyroid hormones and risk of differentiated thyroid carcinoma: the EPIC study J Natl Cancer Inst; 106(6):dju097. PMID: 24824312

17. Olivier M., Weninger A., Ardin M., Huskova H., Castells X., Vallee M.P., McKay J., Nedelko T., Muehlbauer K.R., Marusawa H., Alexander J., Hazelwood L., Byrnes G., Hollstein M., Zavadil J. (2014) Modelling mutational landscapes of human cancers in vitro Sci Rep; 4482. PMID: 24670820

18. Moskal A., Pisa P.T., Ferrari P., Byrnes G., Freisling H., Boutron-Ruault M.C., Cadeau C., Nailler L., Wendt A., Kuhn T., Boeing H., Buijsse B., Tjonneland A., Halkjaer J., Dahm C.C., Chiuve S.E., Quiros J.R., Buckland G., Molina-Montes E., Amiano P., Huerta Castano J.M., Gurrea A.B., Khaw K.T., Lentjes M.A., Key T.J., Romaguera D., Vergnaud A.C., Trichopoulou A., Bamia C., Orfanos P., Palli D., Pala V., Tumino R., Sacerdote C., de Magistris M.S., Bueno-de-Mesquita H.B., Ocke M.C., Beulens J.W., Ericson U., Drake I., Nilsson L.M., Winkvist A., Weiderpass E., Hjartaker A., Riboli E., Slimani N. (2014) Nutrient Patterns and Their Food Sources in an International Study Setting: Report from the EPIC Study PLoS ONE; 9(6):e98647. PMID: 24901309

19. Damiola F., Byrnes G., Moissonnier M., Pertesi M., Deltour I., Fillon A., Le Calvez-Kelm F., Tenet V., McKay-Chopin S., McKay J.D., Malakhova I., Masyakin V., Cardis E., Lesueur F., Kesminiene A. (2014) Contribution of ATM and FOXE1 (TTF2) to risk of papillary thyroid carcinoma in Belarusian children exposed to radiation Int J Cancer; 134(7):1659-1668. PMID: 24105688

20. Wozniak M.B., Le Calvez-Kelm F., Abedi-Ardekani B., Byrnes G., Durand G., Carreira C., Michelon J., Janout V., Holcatova I., Foretova L., Brisuda A., Lesueur F., McKay J., Brennan P., Scelo G. (2013) Integrative genome-wide gene expression profiling of clear cell renal cell carcinoma in Czech Republic and in the United States PLoS. One; 8(3):e57886. PMID: 23526956

21. Mathews J.D., Forsythe A.V., Brady Z., Butler M.W., Goergen S.K., Byrnes G.B., Giles G.G., Wallace A.B., Anderson P.R., Guiver T.A., McGale P., Cain T.M., Dowty J.G., Bickerstaffe A.C., Darby S.C. (2013) Cancer risk in 680,000 people exposed to computed tomography scans in childhood or adolescence: data linkage study of 11 million Australians BMJ; f2360. PMID: 23694687

22. Manser R., Lethaby A., Irving L.B., Stone C., Byrnes G., Abramson M.J., Campbell D. (2013) Screening for lung cancer Cochrane. Database. Syst. Rev; CD001991. PMID: 23794187

23. Kreimer A.R., Johansson M., Waterboer T., Kaaks R., Chang-Claude J., Drogen D., Tjonneland A., Overvad K., Quiros J.R., Gonzalez C.A., Sanchez M.J., Larranaga N., Navarro C., Barricarte A., Travis R.C., Khaw K.T., Wareham N., Trichopoulou A., Lagiou P., Trichopoulos D., Peeters P.H., Panico S., Masala G., Grioni S., Tumino R., Vineis P., Bueno-de-Mesquita H.B., Laurell G., Hallmans G., Manjer J., Ekstrom J., Skeie G., Lund E., Weiderpass E., Ferrari P., Byrnes G., Romieu I., Riboli E., Hildesheim A., Boeing H., Pawlita M., Brennan P. (2013) Evaluation of human papillomavirus antibodies and risk of subsequent head and neck cancer J Clin Oncol; 31(21):2708-2715. PMID: 23775966

24. Caboux E., Paciencia M., Durand G., Robinot N., Wozniak M.B., Galateau-Salle F., Byrnes G., Hainaut P., Le Calvez-Kelm F. (2013) Impact of delay to cryopreservation on RNA integrity and genome-wide expression profiles in resected tumor samples PLoS. One; 8(11):e79826. PMID: 24278187 https://www